STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ82475.1Outer membrane receptor proteins, mostly Fe transport. (743 aa)    
Predicted Functional Partners:
SDZ82546.1
Predicted transcriptional regulator.
       0.818
SDZ82516.1
N-acetylmuramoyl-L-alanine amidase.
       0.776
SEA01852.1
Hypothetical protein.
   
  0.554
SEA23018.1
TonB family C-terminal domain-containing protein.
   
  0.554
SEA59684.1
Protein TonB.
   
  0.554
SEB02161.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
  0.554
SEB21788.1
TonB family C-terminal domain-containing protein.
   
  0.554
SDZ82575.1
Hypothetical protein.
       0.484
SEA74567.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.466
SEB16804.1
Acyl-CoA reductase (LuxC).
  
     0.451
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.