STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ80239.1Predicted nucleotidyltransferase component of viral defense system. (286 aa)    
Predicted Functional Partners:
SDZ80270.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
 
   
 0.951
SEA88279.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
 
   
 0.793
SEB04048.1
Hypothetical protein.
  
     0.517
SEB04063.1
Putative zinc finger/helix-turn-helix protein, YgiT family.
  
     0.461
SEA65527.1
Fic/DOC family protein.
  
     0.459
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.