STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ96408.1Transcriptional regulator, GntR family. (245 aa)    
Predicted Functional Partners:
SEB11672.1
Mannose-6-phosphate isomerase, class I.
 
  
 0.814
SEB11709.1
Starch-binding associating with outer membrane.
  
     0.529
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
  0.495
SEA45341.1
Transcriptional regulator, AraC family.
  
    0.490
SEB17974.1
Protein of unknown function.
  
     0.427
SDZ84947.1
AraC-type DNA-binding protein.
   
    0.414
SEA39287.1
AraC-type DNA-binding protein.
   
    0.414
SEA66800.1
AraC-type DNA-binding protein.
   
    0.414
SEA74444.1
Transcriptional regulator, XRE family with cupin sensor.
  
    0.412
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.