STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ98504.1Outer membrane protein assembly factor BamA. (791 aa)    
Predicted Functional Partners:
SEB13499.1
Beta-barrel assembly machine subunit BamD.
 
 
 0.838
SEA73843.1
Family of unknown function.
 
     0.775
SEA16023.1
Tetratricopeptide repeat-containing protein.
  
    0.771
SEA16553.1
OstA-like protein.
  
    0.767
SEA12825.1
Putative porin.
  
     0.767
SEB16242.1
Hypothetical protein.
  
     0.764
SEB13226.1
Periplasmic chaperone for outer membrane proteins Skp.
  
    0.763
SEA94210.1
Ig-like domain-containing protein.
  
     0.758
SEA12718.1
Hypothetical protein.
  
     0.757
SEB13294.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.753
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.