STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ81036.1AraC-type DNA-binding protein. (273 aa)    
Predicted Functional Partners:
SDZ81002.1
Aldo/keto reductase family protein.
       0.718
SEA79016.1
Hypothetical protein.
  
     0.477
SEB06159.1
MarR family protein.
  
    0.450
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.445
SEB18112.1
Transcriptional regulator, TetR family.
  
     0.443
SEB10645.1
AraC-type DNA-binding protein.
  
     0.441
SEA47430.1
Surface antigen.
  
     0.436
SEA79561.1
Transcriptional regulator, TetR family.
  
     0.417
SEA66190.1
Sensor domain CHASE3-containing protein.
  
  
  0.412
SEA44338.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.406
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.