SEA00074.1 protein (Pedobacter hartonius) - STRING interaction network

Nodes:

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SEA00074.1

Hypothetical protein. (159 aa)

Predicted Functional Partners:

SEA00039.1

0.888

SEA50724.1

0.514

rpoC

0.475

rpoB

0.474

SEA00107.1

0.445

rpoA

0.442

SEB13491.1

0.442

SEA00142.1

0.429

Your Current Organism:

Pedobacter hartonius

NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEA00039.1	SEA00074.1	SAMN05443550_101652	SAMN05443550_101653	Hypothetical protein.	Hypothetical protein.	0.888
SEA00039.1	SEA00107.1	SAMN05443550_101652	SAMN05443550_101654	Hypothetical protein.	AMP-binding enzyme.	0.418
SEA00039.1	SEA00142.1	SAMN05443550_101652	SAMN05443550_101655	Hypothetical protein.	Acyl carrier protein.	0.404
SEA00074.1	SEA00039.1	SAMN05443550_101653	SAMN05443550_101652	Hypothetical protein.	Hypothetical protein.	0.888
SEA00074.1	SEA00107.1	SAMN05443550_101653	SAMN05443550_101654	Hypothetical protein.	AMP-binding enzyme.	0.445
SEA00074.1	SEA00142.1	SAMN05443550_101653	SAMN05443550_101655	Hypothetical protein.	Acyl carrier protein.	0.429
SEA00074.1	SEA50724.1	SAMN05443550_101653	SAMN05443550_103444	Hypothetical protein.	Hypothetical protein.	0.514
SEA00074.1	SEB13491.1	SAMN05443550_101653	SAMN05443550_111183	Hypothetical protein.	RNA polymerase Rpb6.	0.442
SEA00074.1	rpoA	SAMN05443550_101653	SAMN05443550_10286	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.442
SEA00074.1	rpoB	SAMN05443550_101653	SAMN05443550_111104	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.474
SEA00074.1	rpoC	SAMN05443550_101653	SAMN05443550_111105	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.475
SEA00107.1	SEA00039.1	SAMN05443550_101654	SAMN05443550_101652	AMP-binding enzyme.	Hypothetical protein.	0.418
SEA00107.1	SEA00074.1	SAMN05443550_101654	SAMN05443550_101653	AMP-binding enzyme.	Hypothetical protein.	0.445
SEA00107.1	SEA00142.1	SAMN05443550_101654	SAMN05443550_101655	AMP-binding enzyme.	Acyl carrier protein.	0.984
SEA00107.1	SEB13491.1	SAMN05443550_101654	SAMN05443550_111183	AMP-binding enzyme.	RNA polymerase Rpb6.	0.548
SEA00107.1	rpoA	SAMN05443550_101654	SAMN05443550_10286	AMP-binding enzyme.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.503
SEA00107.1	rpoB	SAMN05443550_101654	SAMN05443550_111104	AMP-binding enzyme.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.512
SEA00142.1	SEA00039.1	SAMN05443550_101655	SAMN05443550_101652	Acyl carrier protein.	Hypothetical protein.	0.404
SEA00142.1	SEA00074.1	SAMN05443550_101655	SAMN05443550_101653	Acyl carrier protein.	Hypothetical protein.	0.429
SEA00142.1	SEA00107.1	SAMN05443550_101655	SAMN05443550_101654	Acyl carrier protein.	AMP-binding enzyme.	0.984