STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA27966.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
SEA64956.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.940
SDZ85585.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.939
SEA21065.1
Acetyl esterase/lipase.
  
  0.885
SEA45085.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
   
 0.855
SEA41799.1
Hypothetical protein.
 
  
 0.716
SEA46480.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
    0.671
SEA27901.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.643
SEA65228.1
Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
    
 0.638
SEA48646.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.608
SEA75855.1
Hypothetical protein.
  
     0.590
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.