STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA49407.1Putative GTP cyclohydrolase 1 type 2, NIF3 family. (306 aa)    
Predicted Functional Partners:
SEA77344.1
Beta-galactosidase trimerisation domain-containing protein.
  
     0.654
SEB06302.1
Hypothetical protein.
  
     0.597
SEA49442.1
Chemotaxis protein MotB.
       0.518
SEA52315.1
Hypothetical protein.
  
     0.487
SEA49378.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
       0.466
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.459
SEA96358.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
  0.456
folE
GTP cyclohydrolase I.
    
 0.445
SEA82101.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.442
SEA64577.1
Regulator of RNase E activity RraA.
  
     0.424
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.