STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA37878.1Transcriptional regulator, TetR family. (203 aa)    
Predicted Functional Partners:
SEA81774.1
Transcriptional regulator, TetR family.
  
     0.675
SEA99251.1
Capsule assembly protein Wzi.
  
     0.579
SEA37736.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
 
     0.567
SEA37562.1
PAP2 superfamily protein.
 
     0.556
SEA37647.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.518
SEA37770.1
Phosphatidylglycerophosphatase A.
 
     0.464
SEA37913.1
Helix-turn-helix domain-containing protein.
       0.455
SEA37702.1
CarboxypepD_reg-like domain-containing protein.
 
     0.445
SEA37838.1
Serine palmitoyltransferase.
       0.437
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.