STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA64262.1DNA-binding transcriptional regulator, MarR family. (169 aa)    
Predicted Functional Partners:
SEA64175.1
Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.806
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.802
SEA64234.1
Histidine ammonia-lyase.
       0.802
SEA47430.1
Surface antigen.
  
     0.627
hutG
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
       0.614
SEB08956.1
Predicted metal-dependent phosphohydrolase, HD superfamily.
  
     0.481
SEB08915.1
Surface antigen.
  
     0.462
SEB08936.1
Uncharacterized protein YjiK.
  
     0.430
SEA78676.1
MerC mercury resistance protein.
  
     0.407
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.