STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA64834.1RagB/SusD domain-containing protein. (485 aa)    
Predicted Functional Partners:
SEA64806.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.946
SEA89719.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.846
SEA80934.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.833
SEA77295.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.826
SEB04113.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.817
SEB19101.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.803
SEA92716.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.800
SEA64864.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.789
SEA15475.1
Iron complex outermembrane recepter protein.
  
 
   0.787
SEB00249.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.785
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
Server load: low (12%) [HD]