STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA88754.1Thioredoxin reductase (NADPH). (553 aa)    
Predicted Functional Partners:
SEA66190.1
Sensor domain CHASE3-containing protein.
  
 0.984
SEA95055.1
Signal transduction histidine kinase.
  
 0.984
SDZ83493.1
PAS domain S-box-containing protein.
  
 0.981
SEA85218.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.981
SEA88735.1
Cyclic nucleotide-binding domain-containing protein.
 
 0.979
SDZ96844.1
PAS domain S-box-containing protein.
  
 0.977
SEA14966.1
Signal transduction histidine kinase.
  
 0.970
SDZ93169.1
Hypothetical protein.
  
 0.968
SEA47524.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.965
SDZ80818.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.952
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.