STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA94715.1Hypothetical protein. (270 aa)    
Predicted Functional Partners:
SEA94695.1
Copper chaperone CopZ.
 
     0.968
SEA94678.1
Hypothetical protein.
       0.742
SEA21493.1
Hypothetical protein.
  
     0.719
SEA46224.1
stearoyl-CoA desaturase (delta-9 desaturase).
  
     0.667
SEB09985.1
stearoyl-CoA desaturase (delta-9 desaturase).
  
     0.658
SEA94733.1
Hypothetical protein.
       0.605
SEA87163.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.573
SEB00299.1
Cytochrome c554 and c-prime.
  
     0.566
SDZ81520.1
Cytochrome c554 and c-prime.
  
     0.557
SEB09614.1
CarboxypepD_reg-like domain-containing protein.
  
     0.549
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.