STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA95125.1CheB methylesterase. (188 aa)    
Predicted Functional Partners:
SEA95055.1
Signal transduction histidine kinase.
 
 0.997
SEA66190.1
Sensor domain CHASE3-containing protein.
 
 0.986
SEA95101.1
Chemotaxis protein methyltransferase CheR.
 
  0.985
SEA14966.1
Signal transduction histidine kinase.
 
 0.982
SEA47524.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
0.927
SEA95034.1
Signal transduction histidine kinase.
 
 
 0.925
SEA15000.1
Chemotaxis protein methyltransferase CheR.
 
  0.907
SDZ80818.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 
0.890
SEA95081.1
Response regulator receiver domain-containing protein.
 
 
   0.876
SDZ83493.1
PAS domain S-box-containing protein.
 
 0.861
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.