STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA93005.1Flagellum-specific peptidoglycan hydrolase FlgJ. (237 aa)    
Predicted Functional Partners:
SEA93027.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
 
   
0.911
SEA92983.1
Predicted O-methyltransferase YrrM.
       0.864
SEA92965.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.858
SEA17004.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.818
SEB19117.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.818
SEA93075.1
Hypothetical protein.
       0.775
SEA92896.1
Gliding motility-associated lipoprotein GldH.
 
     0.771
SEB20635.1
Protein of unknown function.
  
  
 0.767
SEA95196.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.757
SEA93048.1
Hypothetical protein.
 
     0.748
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.