STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB00656.1Aminobenzoyl-glutamate utilization protein B. (479 aa)    
Predicted Functional Partners:
SEB00704.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
 
  
  0.829
SEB00718.1
Peptidase dimerisation domain-containing protein.
 
  
  0.813
SEB00670.1
Aminobenzoyl-glutamate utilization protein B.
 
    
0.760
SEB00640.1
Zinc carboxypeptidase.
 
     0.748
SEB00686.1
Zinc carboxypeptidase.
 
     0.704
SEB19556.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.665
SEB00752.1
Starch-binding associating with outer membrane.
 
     0.557
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.486
SEB12019.1
Amidohydrolase family protein.
  
     0.462
SEB00768.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.450
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.