STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA99251.1Capsule assembly protein Wzi. (548 aa)    
Predicted Functional Partners:
SEA99289.1
Hypothetical protein.
 
     0.885
SEA99272.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
     0.791
SEA99234.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.786
SEA46971.1
PAP2 superfamily C-terminal.
  
     0.707
SEA93903.1
TM2 domain-containing protein.
  
     0.676
SEA99601.1
Hypothetical protein.
  
     0.632
SEB08965.1
Transcriptional regulator, TetR family.
  
     0.607
SEA37878.1
Transcriptional regulator, TetR family.
  
     0.579
SDZ93432.1
Hypothetical protein.
  
     0.565
SEB15623.1
Protein of unknown function.
  
     0.564
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.