STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB05899.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)    
Predicted Functional Partners:
SEB05885.1
FecR family protein.
 
   0.829
SDZ83349.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.658
SEA77243.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.657
SEA88317.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.620
SEB05872.1
Outer membrane receptor proteins, mostly Fe transport.
  
    0.603
SEA77271.1
FecR family protein.
  
   0.599
SEA35968.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.594
SEA63916.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.592
SEB00784.1
FecR family protein.
  
   0.587
SDZ83317.1
FecR family protein.
  
   0.581
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.