STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB04146.1DUF1680 family protein. (680 aa)    
Predicted Functional Partners:
SEB12148.1
Protein of unknown function.
 
     0.767
SEB17974.1
Protein of unknown function.
 
     0.766
SEB17982.1
Protein of unknown function.
 
     0.765
SEB17965.1
Starch-binding associating with outer membrane.
 
     0.751
SEB17959.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.744
SEB04163.1
Endonuclease G.
       0.686
SEB04129.1
RagB/SusD domain-containing protein.
       0.623
SEB04113.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.610
SDZ90355.1
Predicted alpha-1,6-mannanase, GH76 family.
  
     0.596
SEB21685.1
Alpha-L-rhamnosidase N-terminal domain-containing protein.
  
     0.596
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.