STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB06139.1L-seryl-tRNA(Ser) seleniumtransferase. (521 aa)    
Predicted Functional Partners:
SEA64550.1
Dihydroorotase.
 
    0.826
SEB12043.1
Dihydroorotase.
 
    0.826
SEA64577.1
Regulator of RNase E activity RraA.
 
     0.738
SDZ81785.1
Hypothetical protein.
  
     0.736
SEA77344.1
Beta-galactosidase trimerisation domain-containing protein.
  
     0.631
SEA48247.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
     0.616
SEB06128.1
Quinoprotein glucose dehydrogenase.
 
     0.592
SEA18508.1
seryl-tRNA synthetase.
     
 0.552
SEB00511.1
Molybdopterin synthase sulfur carrier subunit.
  
 
   0.541
SEB06147.1
Acetyltransferase (GNAT) domain-containing protein.
       0.511
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.