STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB10623.1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (198 aa)    
Predicted Functional Partners:
SEB19556.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.799
SEB10610.1
Hypothetical protein.
       0.773
SEA66190.1
Sensor domain CHASE3-containing protein.
   
 0.633
SEA95055.1
Signal transduction histidine kinase.
   
 0.633
SDZ93169.1
Hypothetical protein.
   
 0.580
SDZ83493.1
PAS domain S-box-containing protein.
   
 0.574
SEA85218.1
PAS/PAC sensor hybrid histidine kinase.
   
 0.574
SEA14966.1
Signal transduction histidine kinase.
   
 0.510
SEB10599.1
Hypothetical protein.
       0.498
SEA20246.1
Tetratricopeptide repeat-containing protein.
  
 
  0.488
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.