STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAStarch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (468 aa)    
Predicted Functional Partners:
SEB08886.1
Glucose-1-phosphate adenylyltransferase.
 
 
 0.998
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.994
SEA26250.1
Starch synthase.
  
  
  0.971
SEA85052.1
4-alpha-glucanotransferase/malto- oligosyltrehalose synthase,TIGR02401.
 
 
 0.934
SEA85035.1
Maltooligosyl trehalose hydrolase.
  
 
 0.889
SEB18130.1
Starch phosphorylase.
  
 
 0.853
SDZ98794.1
Alpha-amylase.
 
 
 0.742
SEA49378.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.677
SEA85012.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.677
SEA98341.1
Glycogen operon protein.
  
 
 0.677
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.