STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB08915.1Surface antigen. (859 aa)    
Predicted Functional Partners:
SEB08956.1
Predicted metal-dependent phosphohydrolase, HD superfamily.
 
     0.950
SEB08924.1
Hypothetical protein.
 
     0.944
SEB08936.1
Uncharacterized protein YjiK.
 
     0.917
SEB08946.1
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).
       0.771
SDZ83465.1
Hypothetical protein.
 
     0.760
SEB13499.1
Beta-barrel assembly machine subunit BamD.
  
 
 0.653
SEB08965.1
Transcriptional regulator, TetR family.
       0.592
SDZ83233.1
Hypothetical protein.
   
   0.554
SDZ83261.1
Hypothetical protein.
   
   0.554
SEB12550.1
Hypothetical protein.
   
   0.554
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.