STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB12943.1Periplasmic chaperone for outer membrane proteins Skp. (201 aa)    
Predicted Functional Partners:
SEB12397.1
Rod shape-determining protein MreD.
  
     0.667
SEA16023.1
Tetratricopeptide repeat-containing protein.
  
    0.636
SDZ98504.1
Outer membrane protein assembly factor BamA.
  
    0.610
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.571
SEB13195.1
Outer membrane protein beta-barrel domain-containing protein.
 
 
   0.562
SEA16553.1
OstA-like protein.
  
   
 0.560
SEB13294.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.550
SEA73843.1
Family of unknown function.
 
     0.548
SEB20279.1
WD40-like Beta Propeller Repeat.
 
   0.548
SEA96680.1
Outer membrane protein beta-barrel domain-containing protein.
    
 
 0.521
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.