STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB11996.1Dipeptidyl aminopeptidase/acylaminoacyl peptidase. (779 aa)    
Predicted Functional Partners:
SEB12008.1
Carboxypeptidase C (cathepsin A).
 
     0.834
SEB11976.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.746
SEB11986.1
Starch-binding associating with outer membrane.
       0.746
SEB12019.1
Amidohydrolase family protein.
 
     0.657
SEB15463.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
  0.572
SEB21816.1
Imidazolonepropionase.
  
     0.557
SEB21813.1
Hypothetical protein.
  
     0.535
SEB21820.1
Imidazolonepropionase.
  
     0.535
SDZ93273.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.532
SEA92847.1
Zinc carboxypeptidase.
  
     0.528
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.