STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB15479.1N-acetylmuramoyl-L-alanine amidase. (280 aa)    
Predicted Functional Partners:
SEA41668.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 
0.936
SEB15485.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
     0.864
SEB15463.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
 
     0.726
SEB05913.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.715
SEB15471.1
Hypothetical protein.
 
     0.681
SEA17004.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.677
SEA93027.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
 
 
 0.659
SEA60696.1
LysM repeat-containing protein.
 
 
 0.636
SEA85491.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
 
  0.621
SEB19117.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.617
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.