STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB15590.1acyl-CoA thioester hydrolase/thioesterase-3. (139 aa)    
Predicted Functional Partners:
SEB10178.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.974
SEA87633.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.866
SEB10162.1
Acyl transferase domain-containing protein; Belongs to the P-Pant transferase superfamily.
  
 0.803
SEB08984.1
Amino acid adenylation domain-containing protein.
   
 0.719
rpsO
Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.719
SEB21303.1
[Acyl-carrier-protein] S-malonyltransferase.
   
 0.697
SEB08993.1
Amino acid adenylation domain-containing protein.
   
 0.685
SEB19279.1
Protein of unknown function.
  
  
 0.604
SEB06950.1
Condensation domain-containing protein.
   
 0.551
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
 0.488
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.