STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB14398.1Surface antigen. (400 aa)    
Predicted Functional Partners:
SEB13499.1
Beta-barrel assembly machine subunit BamD.
  
 
 0.653
SEB12319.1
Hypothetical protein.
  
     0.572
SDZ83233.1
Hypothetical protein.
   
   0.554
SDZ83261.1
Hypothetical protein.
   
   0.554
SEB12550.1
Hypothetical protein.
   
   0.554
SEB14390.1
Sulfate permease, SulP family.
       0.540
SEA46971.1
PAP2 superfamily C-terminal.
  
     0.531
SEA65869.1
Calcineurin-like phosphoesterase.
  
     0.530
SEA46165.1
Sugar or nucleoside kinase, ribokinase family.
  
 
   0.498
SEA36933.1
Outer membrane protein TolC.
  
     0.493
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.