STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB20049.1Putative membrane protein. (286 aa)    
Predicted Functional Partners:
SEB20059.1
Acetoin utilization deacetylase AcuC.
 
     0.881
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.864
SEB20066.1
DNA topoisomerase-3.
       0.685
SEB20037.1
Hypothetical protein.
       0.639
SEB14273.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
     0.495
SEB20021.1
Secondary thiamine-phosphate synthase enzyme.
 
     0.446
SEA47585.1
tRNA pseudouridine65 synthase.
       0.444
SEB15168.1
GAF domain-containing protein.
       0.444
SEB14291.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.437
SEB20028.1
Conserved hypothetical protein (putative transposase or invertase).
       0.434
Your Current Organism:
Pedobacter hartonius
NCBI taxonomy Id: 425514
Other names: CIP 109468, DSM 19033, P. hartonius, Pedobacter hartonius Muurholm et al. 2007, WB 3.3-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.