STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSBN1LRound spermatid basic protein 1 like. (868 aa)    
Predicted Functional Partners:
DPY30
Dpy-30 histone methyltransferase complex regulatory subunit.
      
 0.585
KMT5B
Lysine methyltransferase 5B.
   
  
 0.553
C2orf42
Chromosome 2 open reading frame 42.
      
 0.545
NCAPD2
non-SMC condensin I complex subunit D2.
      
 0.538
SMC4
Structural maintenance of chromosomes 4.
    
 
 0.526
SMC2
Structural maintenance of chromosomes 2.
    
 
 0.501
BCAS2
BCAS2 pre-mRNA processing factor.
      
 0.497
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
      
 0.457
ENSCPGP00000003360
annotation not available
      
 0.435
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.