STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMADHCMetabolism of cobalamin associated D. (296 aa)    
Predicted Functional Partners:
MMACHC
Metabolism of cobalamin associated C.
    
 0.878
MTR
5-methyltetrahydrofolate-homocysteine methyltransferase.
    
 0.859
MTRR
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
     
 0.844
ENSCPGP00000003394
annotation not available
    
 0.799
ENSCPGP00000008628
annotation not available
    
 0.756
POR
Cytochrome p450 oxidoreductase.
     
 0.670
NOS1
Nitric oxide synthase 1.
     
 0.670
NOS2
Nitric oxide synthase 2.
     
 0.670
NDOR1
NADPH dependent diflavin oxidoreductase 1.
     
 0.651
NPL
N-acetylneuraminate pyruvate lyase.
    
 0.629
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.