STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNFRSF11BTNF receptor superfamily member 11b. (414 aa)    
Predicted Functional Partners:
TNFSF11
TNF superfamily member 11.
    
 0.995
CD40LG
CD40 ligand.
    
 0.914
TNFSF15
TNF superfamily member 15.
   
 0.889
ENSCPGP00000022546
annotation not available
   
 0.849
ENSCPGP00000001576
annotation not available
    
 0.743
TNFRSF11A
TNF receptor superfamily member 11a.
   
0.736
TNFRSF6B
TNF receptor superfamily member 6b.
  
  
 
0.689
TRAF7
TNF receptor associated factor 7.
    
 0.580
TRAF6
TNF receptor associated factor 6.
    
 0.579
TRAF2
TNF receptor associated factor 2.
    
 0.579
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.