STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EML5EMAP like 5. (1990 aa)    
Predicted Functional Partners:
MAD2L1
Mitotic arrest deficient 2 like 1.
   
 0.842
IFT140
Intraflagellar transport 140.
    
 0.799
MAD1L1
Mitotic arrest deficient 1 like 1.
    
 0.791
TAF9
TATA-box binding protein associated factor 9.
    
 0.772
TAF12
TATA-box binding protein associated factor 12.
    
 0.772
TAF2
TATA-box binding protein associated factor 2.
    
 0.769
TAF7
TATA-box binding protein associated factor 7.
    
 0.766
CDC16
Cell division cycle 16.
   
 0.766
ENSCPGP00000013559
annotation not available
    
 0.766
WDR19
WD repeat domain 19.
    
 0.764
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.