STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBXN4UBX domain protein 4. (511 aa)    
Predicted Functional Partners:
UBXN6
UBX domain protein 6.
    
 0.997
ENSCPGP00000020114
annotation not available
    
 0.988
ENSCPGP00000023265
annotation not available
    
 0.988
ASPSCR1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 0.971
NSFL1C
NSFL1 cofactor.
    
 0.910
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.909
SPATA5
Spermatogenesis associated 5.
    
 0.909
UBXN2A
UBX domain protein 2A.
    
 0.895
UBXN2B
UBX domain protein 2B.
    
 0.876
FAF2
Fas associated factor family member 2.
   
 
 0.874
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.