STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOXL3Lysyl oxidase like 3. (1043 aa)    
Predicted Functional Partners:
ENSCPGP00000007945
annotation not available
    
 0.739
ARID4B
AT-rich interaction domain 4B.
    
 0.719
ARID4A
AT-rich interaction domain 4A.
    
 0.719
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.682
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.680
GATA6
GATA binding protein 6.
    
 0.650
FBLN5
Fibulin 5.
     
 0.607
WDR90
WD repeat domain 90.
    
 0.605
LOXL4
Lysyl oxidase like 4.
  
  
 
0.592
LOXL2
Lysyl oxidase like 2.
  
  
 
0.591
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.