STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPGP00000020517annotation not available (1461 aa)    
Predicted Functional Partners:
ENSCPGP00000028415
annotation not available
    
 0.604
TNC
Tenascin C.
    
  0.582
TNR
Tenascin R.
    
  0.582
TNN
Tenascin N.
    
  0.582
HAPLN1
Hyaluronan and proteoglycan link protein 1.
    
 0.555
ENSCPGP00000002014
annotation not available
   
 0.539
HGFAC
HGF activator.
   
  0.533
HABP2
Hyaluronan binding protein 2.
    
  0.528
ENSCPGP00000026812
annotation not available
    
  0.527
CDH1
Cadherin 1.
    
  0.527
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.