STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAFAH1B1Platelet activating factor acetylhydrolase 1b regulatory subunit 1. (410 aa)    
Predicted Functional Partners:
PAFAH1B2
Platelet activating factor acetylhydrolase 1b catalytic subunit 2.
    
 0.997
ENSCPGP00000022337
annotation not available
    
 0.985
NDE1
nudE neurodevelopment protein 1.
    
 0.965
DYNC1H1
Dynein cytoplasmic 1 heavy chain 1.
   
 0.963
NUDC
Nuclear distribution C, dynein complex regulator.
    
 0.946
DCTN2
Dynactin subunit 2.
    
 0.941
YWHAE
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon.
   
 0.914
ENSCPGP00000022482
annotation not available
    
 0.911
DYNC1I1
Dynein cytoplasmic 1 intermediate chain 1.
   
 0.906
DYNC1I2
Dynein cytoplasmic 1 intermediate chain 2.
   
 0.906
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.