STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPGP00000027140annotation not available (121 aa)    
Predicted Functional Partners:
CBX8
Chromobox 8.
    
 0.827
KDM2B
Lysine demethylase 2B.
    
 0.782
KDM2A
Lysine demethylase 2A.
    
 0.782
CBX4
Chromobox 4.
    
 0.740
C9
Complement C9.
   
 0.691
CBX2
Chromobox 2.
    
 0.690
ENSCPGP00000023017
annotation not available
   
 0.663
RNF2
Ring finger protein 2.
    
 0.662
RING1
Ring finger protein 1.
    
 0.662
PCGF2
Polycomb group ring finger 2.
    
 0.660
Your Current Organism:
Calidris pygmaea
NCBI taxonomy Id: 425635
Other names: C. pygmaea, Calidris pygmea, Calidris pygmeus, Eurynorhynchus pygmaeus, Eurynorhynchus pygmeum, Eurynorhynchus pygmeus, Platalea pygmea, Spoon-billed sandpiper
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.