Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FP66_01320Cytoskeleton protein rodZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
FP66_01325
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.929
FP66_11195
Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.873
FP66_01315
Pilus assembly protein PilF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.822
FP66_01330
Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.820
FP66_01335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.816
FP66_14005
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.814
FP66_03840
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.796
FP66_04655
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.796
FP66_01340
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
FP66_01345
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.754
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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