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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP66_01320Cytoskeleton protein rodZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
FP66_01325
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.942
FP66_11195
Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.932
FP66_14005
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.910
secA
Preprotein translocase subunit SecA; Functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not es [...]
  
   0.892
FP66_06505
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.890
FP66_06520
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.890
FP66_06535
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.890
FP66_01315
Pilus assembly protein PilF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.855
FP66_01330
Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.845
FP66_01335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.829
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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