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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP66_01445Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)    
Predicted Functional Partners:
FP66_06495
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.895
FP66_01450
Sulfur acceptor protein CsdL; Accepts sulfur from CsdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.889
FP66_00145
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.877
FP66_06275
Iojap-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.877
rplQ
50S ribosomal protein L17; Is a component of the macrolide binding site in the peptidyl transferase center; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.875
rplU
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.874
FP66_06590
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.867
FP66_06440
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.863
FP66_06545
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.862
rplX
50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.862
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.