Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FP66_01765Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)    
Predicted Functional Partners:
FP66_06620
DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.851
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.837
FP66_02340
DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.818
FP66_06055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.816
FP66_06735
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.797
FP66_01760
Methionine sulfoxide reductase B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.719
FP66_01770
Glutamate--cysteine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
FP66_01775
Dihydrolipoamide acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
FP66_06525
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.644
FP66_01780
anti-RNA polymerase sigma 70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.626
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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