Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FP66_01945Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)    
Predicted Functional Partners:
FP66_14620
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.982
glyA
Serine hydroxymethyltransferase; Catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.976
FP66_10315
Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.943
FP66_01280
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.922
FP66_00410
Serine--glyoxylate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.880
FP66_02790
Threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.880
FP66_10285
CDP-diacylglycerol--serine O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.875
trpA
Tryptophan synthase subunit alpha; Catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.867
FP66_05960
Tryptophan synthase alpha chain; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.867
FP66_09130
Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.867
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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