Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_01950DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)    
Predicted Functional Partners:
FP66_01885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
FP66_01945
Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
FP66_12395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
FP66_01940
DNA topoisomerase IV subunit A; Decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
FP66_04160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
FP66_15695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
FP66_14335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.431
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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