Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
FP66_02150Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
FP66_02140
Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.856
FP66_02135
Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.827
FP66_00150
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.676
FP66_13445
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.671
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.668
FP66_06525
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.667
FP66_06540
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.667
FP66_02160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
FP66_03540
Tyrosine recombinase XerC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.617
FP66_14410
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.575
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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