Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FP66_02675Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
FP66_04185
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.868
motB
Flagellar motor protein MotB; With MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.860
FP66_15195
Translocation protein TolB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.845
FP66_03135
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.816
FP66_09790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.814
FP66_14820
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.805
FP66_01835
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.785
FP66_04970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.776
FP66_02680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.725
FP66_02665
Nucleoside-triphosphate diphosphatase; HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.694
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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