Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FP66_02845DNA repair protein RadA; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)    
Predicted Functional Partners:
FP66_07020
Recombinase RecX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.927
FP66_07025
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.924
FP66_13305
Recombination and repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.716
FP66_02850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
FP66_02855
tRNA 2-selenouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
FP66_02840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.710
FP66_02370
ATP-dependent DNA helicase RecG; Catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.706
FP66_09855
Thiamine-monophosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.697
uvrC
The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.695
FP66_02970
DNA polymerase I; Has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.673
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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