STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP66_03060Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (925 aa)    
Predicted Functional Partners:
FP66_03065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.957
FP66_03070
Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.940
FP66_03075
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.932
FP66_02955
Arginine decarboxylase; Catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.884
FP66_01070
Arginine succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.871
FP66_01075
Arginine N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.871
FP66_14750
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.822
FP66_03055
Succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.710
FP66_10135
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.706
FP66_11090
N-acetylglutamate synthase; Catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.628
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.