Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_03215LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)    
Predicted Functional Partners:
FP66_08035
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
FP66_03230
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
FP66_09360
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.930
FP66_03220
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.857
FP66_05805
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.734
FP66_02935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.672
FP66_14570
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.643
FP66_03210
Catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.618
FP66_03205
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
FP66_06120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.559
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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