Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_03260Appr-1-p processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)    
Predicted Functional Partners:
FP66_06735
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.795
rplX
50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.736
FP66_06440
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.734
FP66_15765
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.709
FP66_06495
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.650
FP66_06510
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.649
FP66_15880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.621
FP66_16200
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.618
FP66_00145
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.610
rplU
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.606
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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