Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_03330Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)    
Predicted Functional Partners:
FP66_03320
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
FP66_03325
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.850
FP66_03300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.827
FP66_03305
Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.819
FP66_03310
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
FP66_03315
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.743
FP66_14055
Ribonucleotide-diphosphate reductase subunit alpha; Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.637
FP66_06690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.487
FP66_11795
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.442
FP66_12905
Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.432
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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